Tenua is a handy, easy to use chemical kinetics simulation application based on KINSIM. It allows you to write out chemical reactions and calculate the concentrations of all the species over time. It can also compare the simulation to real data and automatically calculate the correct rate constants and other parameters to fit the data.
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Use TENUA to quickly calculate reaction rates of numerous species. A chemist has all the equipment for an experiment and needs to make sure she is ready for it. The best way to do this is a rigorous, well-organized plan. Tenua helps her create and test this plan with options available to adjust conditions, perform calculations, and compare data to and from experiments. Recommended for Students: Those who understand chemistry kinetics and the use of simulation software. Why TENUA? TENUA makes the chemical reaction kinetics easier than it has ever been by automating and simplifying the process. It does this through a graphical user interface (GUI) that allows you to interact with TENUA and create your own kinetic experiments. Import a spreadsheet with data into TENUA for calculation and optimization. You can directly import a spreadsheet into TENUA and create a Run/Simulation/Plot to evaluate the data. The import options include File/Open or Use Wizard to easily find the file. Review the data and create the best experiment to analyze the trends. You can easily find the best reaction rates and kinetic constants through a graphical user interface. In addition to the rapid reaction rate optimization and plotting features, TENUA can directly compare the simulation to the real data to identify trends and parameters. Optimize your experimental setup and create the perfect experiment. You can easily perform the various optimization settings by pressing the Optimize button and then selecting the desired settings. The parameters will be adjusted and the data will be optimized. Built in 50 additional reaction rates for a wide variety of problems. Do your research and create your own, custom reactions. By adding reactions into a recipe, you can create a simulation and identify reactions for different data sets. You can also create new reactions and add them to a recipe as you see and use them. Automatic tuning of parameters for kinetic analysis. You can now automatically optimize and analyze the data using automatic tuning of parameters. Test and compare the simulation with real data. By directly comparing the model to experimental data, you can see what fits better and make adjustments. Analyze reaction kinetics and find the best rate constants. You can use the built-in reaction rates to create any type of kinetics, including pseudo first-order, pseudo-bi-order, and the Michaelis-Ment 2f7fe94e24
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Tenua is a software tool to simulate and fit the dynamics of chemical reactions. It is able to simulate multi-species chemical reactions, with built in modules to calculate the concentrations of all the species over time, fit the data to obtain kinetic constants and even calculate the interaction effects of all the species. The module for calculating the concentrations of all the species can be extended by plugins, including plugins for measuring turbidity, chemiluminescence or fluorescence at different time points, as well as calculating the concentrations of multiple species for multiple modes of detection. Import a graph file, select source and destination buffer, add reaction and user defined variables, set initial conditions, start the simulation and finally analyze the data to extract the kinetic constants. Tenua can also fit the data to a kinetic model, calculate the percent goodness-of-fit and even calculate the confidence intervals if multiple data sets are fitted, by applying the log-likelihood ratio to the data. Tenua also allows to evaluate parameter confidence intervals via nested sampling, which is highly preferable when dealing with high-dimensional problems. Tenua Setup: Tenua can be used with just one or several buffers. You can also set initial conditions and remove species, sets buffers separately from each other, as well as turn on and off different modules in the simulation. Tenua can calculate the species concentrations at each time point or take samples at various time points to calculate how the species change over time. Tenua can calculate the inter-species interactions (both pairs and triples) by calculating the first-order rate constants of the pair reactions, and also the interactions between the reactions and the addition or removal of species by calculating a first-order rate constant for each reaction. Tenua Parameters: 1. Data fitting: • calculate initial concentrations • calculate kinetic constants • calculate confidence intervals • calculate proportionate goodness-of-fit • calculate MSE (mean square error) • calculate percent goodness-of-fit • calculate confidence intervals • save confidence intervals • save kinetic constants • save goodness-of-fit ratios • analyze goodness-of-fit • save initial concentrations • set range of timepoints • set range of species • set range of reactions 2. Testing results: • simulate with a single buffer • simulate with multiple buffers, including external flow • simulate with external flow • generate graph and files • simulate with multiple species • compare simulation with real data •
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Tenua is a chemical kinetics simulation application written in Java. It runs perfectly in the java virtual machine (JVM) and doesn’t require any additional server software. Therefore, it’s platform-independent and can easily be used for multiple programs. Tenua Key Features: * Multiple working modes (steady-state, dynamic, multi-staged, and integration) * Compute the concentration of any species * Interprets and stores your data in chemical kinetics models * Show results as qualitative and quantitative graphs * Compares simulation to real data * Calculate reaction rates and reaction orders * Calculate reaction rates and reaction orders from starting concentrations * Calculates simulated time in multiple ways: from start, from end or from middle * Calculates simulated time in multiple ways: from start, from end or from middle * Simulates time in multiple ways: from start, from end or from middle * Simulates time in multiple ways: from start, from end or from middle * Convert all data to Excel, another standard file type for quantitative analysis * Convert all data to Excel, another standard file type for quantitative analysis * Convert all data to ClasSAR, another standard file type for quantitative analysis * Convert all data to ClasSAR, another standard file type for quantitative analysis * Convert multiple files to Excel, another standard file type for quantitative analysis * Convert multiple files to Excel, another standard file type for quantitative analysis * Multi-Step Kinetics (msk) Simulation * KIND-SIM with the Kinetics Interactive Dialog (KIND-SIM) * KINSIM, the Chemistry Kinetics Simulation Package * Manages models * Manages models with a graphical user interface * Manages reactions * Reaction automation * Reaction automation * Dynamic reaction automation * Timetables * Timetables * Worksheet * Worksheet * Simulate a computer experiment * Simulate a computer experiment * Simulate a computer experiment * Simulate a computer experiment * Simulate a computer experiment * Use tabulated data * Use tabulated data * Use tabulated data * Use tabulated data * Use tabulated data * Use tabulated data * Use tabulated data * Use tabulated data * Use tabulated data * Use tabulated data * Use tabulated data * Allow binding calculations * Allow binding calculations * Allow
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